PIRSF for InterPro          April 27, 2005     
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Total 1347 SFs (based on Swiss-Prot 45.2 and TrEMBL 28.2)  



Data files: 

pirsf_list
      A list of PIRSF ACs with last submission date  
pirsf_descript.05_04_27 
      PIRSF description files, including AC(PIRSF#), ID, DE, TP, PMID, DOMAIN
pirsf_members.05_04_27: 
      List of members, including PIRSF#, CRC64 code, Protein AC#, status(1/0)
      ( Status=0 is for the member which can not be detected by the model or fragments) 
pirsf_fragments.05_04_27:
      List of members that are fragments.
pirsf.dat, sf.tb and sf.seq: 
      data needed for the scan program pirsf.pl
sf_hmm: 
      SF hmm file in gzip format 
sf_hmm_subf:
      Sub-family hmm file in gzip format
pirsf_pos.05_04_27:
      Match position, including PIRSF#, Protein AC, start_pos, end_pos, e-value


Note: 

Major changes have been made for PIRSF since Nov. 2004, which include the followings:
 1. HMM cut-off conditions have been changed.
 2. If a sequence can be placed into a subfamily then it will be placed into the parent PIRSF
 3. Add BLAST search:  predicted sequence is checked by BLAST for the best and "majority" hit to the PIRSF.
See pirsf.pl for detail.