Representative Proteomes (RP)

Release 2024_02, 3-27-2024
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Totoal # of complete proteomes: 31889 
# of proteomes in RP75(CMT>=75%): 18149 
# of proteomes in RP55(CMT>=55%): 11559 
# of proteomes in RP35(CMT>=35%): 5830 
# of proteomes in RP15(CMT>=15%): 1859 

Representative Proteomes are proteomes that can best represent all complete proteomes in terms of 
the majority of the sequence space and information. We provide four sets of Representative Proteomes
based on co-membership threshold (CMT) cut-off to allow users to decrease or increase the granularity
of the sequence space based on their requirements (PMID: 21556138).

Home page: 
http://pir.georgetown.edu/rps/

Browse: 
http://pir.georgetown.edu/rps/browse.html

BLAST search: 
http://pir.georgetown.edu/rps/blast_rp.shtml

Make your own RP sequence file:
http://pir.georgetown.edu/rps/mk_rp.shtml

FTP download:
ftp://ftp.pir.georgetown.edu/databases/rps/
Sequence downloads at different cut-offs and for all complete proteomes (one protein per gene).
Text files of proteome clusters at different co-membership threshold cut-offs.

ftp://ftp.pir.georgetown.edu/databases/rps/rg
Text files of genome clusters at different co-membership threshold cut-offs. Representative genomes (RGs) are constructed based on the corresponding RPs.

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Protein Information Resource (PIR)
Georgetown University Medical Center 
3300 Whitehaven Street, NW, Suite 1200 
Washington, DC 20007, USA
Email: pirmail@georgetown.edu