================================================ PRotein Ontology (PRO) Release 25.0, version 0 23-December-2011 The Protein Ontology Consortium--Protein Information Resource, The Jackson Laboratory, Reactome, and the Department of Philosophy at the State University of New York at Buffalo--is pleased to announce PRO Release 25.0 (23-December-2011). PRO describes the relationships of proteins and protein evolutionary classes, delineates the multiple protein forms of a gene locus (ontology for protein forms), protein complexes, and interconnects existing ontologies. Further information is available at http://pir.georgetown.edu/pro/. In PRO Release 25.0, version 0: There are 28332 PRO terms 4 terms are in the 'organism-family' category. 314 terms are in the 'family' category. 18274 terms are in the 'gene' category. 1429 terms are in the 'sequence' category. 6101 terms are in the 'modification' category. 114 terms are in the 'complex' category. 855 terms are in the 'organism-gene' category. 450 terms are in the 'organism-sequence' category. 442 terms are in the 'organism-modification' category. 225 terms are in the 'organism-complex' category. 12 terms are in the 'union' category. 1598 terms have some kind of annotation, codifying the information from 1089 papers. 2389 connections to GO (828 PRO terms). 374 connections to MOD (327 PRO terms). 604 connections to Pfam (361 PRO terms). 338 connections to SO (317 PRO terms). 306 annotations of a phenotype (299 PRO terms). The ontology includes a subset of terms from GO, MOD, CHEBI, and SO ontologies that are used for logical definitions. If using OBO Edit to view PRO, please turn on the reasoner in order to display the hierarchy. _Current changes_ None _Forthcoming changes_ 1) Continue to add shorthand labels to terms. ================================================